| Align() | OBAlign | |
| GetAlignment() | OBAlign | |
| GetRMSD() | OBAlign | |
| GetRotMatrix() | OBAlign | |
| OBAlign(bool includeH=false, bool symmetry=true) | OBAlign | |
| OBAlign(const OBMol &refmol, const OBMol &targetmol, bool includeH=false, bool symmetry=true) | OBAlign | |
| OBAlign(const vector< vector3 > &ref, const vector< vector3 > &target) | OBAlign | |
| SetRef(const vector< vector3 > &ref) | OBAlign | |
| SetRefMol(const OBMol &refmol) | OBAlign | |
| SetTarget(const vector< vector3 > &target) | OBAlign | |
| SetTargetMol(const OBMol &targetmol) | OBAlign | |
| UpdateCoords(OBMol *target) | OBAlign |