| _c | OBAtom | protected |
| _cidx | OBAtom | protected |
| _ele | OBAtom | protected |
| _fcharge | OBAtom | protected |
| _flags | OBAtom | protected |
| _hyb | OBAtom | protected |
| _id | OBAtom | protected |
| _idx | OBAtom | protected |
| _imph | OBAtom | protected |
| _isotope | OBAtom | protected |
| _parent | OBAtom | protected |
| _pcharge | OBAtom | protected |
| _residue | OBAtom | protected |
| _spinmultiplicity | OBAtom | protected |
| _type | OBAtom | protected |
| _v | OBAtom | mutableprotected |
| _vbond | OBAtom | protected |
| _vdata | OBBase | protected |
| AddBond(OBBond *bond) | OBAtom | inline |
| AddResidue(OBResidue *res) | OBAtom | inline |
| AverageBondAngle() | OBAtom | |
| BeginBond(OBBondIterator &i) | OBAtom | |
| BeginBonds() | OBAtom | inline |
| BeginData() | OBBase | inline |
| BeginNbrAtom(OBBondIterator &i) | OBAtom | |
| CastAndClear(bool clear=true) | OBBase | inline |
| ClassDescription() | OBBase | inlinestatic |
| Clear() | OBAtom | virtual |
| ClearBond() | OBAtom | inline |
| ClearCoordPtr() | OBAtom | inline |
| CloneData(OBGenericData *d) | OBBase | |
| CountBondsOfOrder(unsigned int bo) | OBAtom | |
| CountFreeOxygens() const | OBAtom | |
| CountFreeSulfurs() const | OBAtom | |
| CountRingBonds() const | OBAtom | |
| DataSize() const | OBBase | inline |
| DeleteBond(OBBond *bond) | OBAtom | |
| DeleteData(unsigned int type) | OBBase | |
| DeleteData(OBGenericData *) | OBBase | |
| DeleteData(std::vector< OBGenericData *> &) | OBBase | |
| DeleteData(const std::string &s) | OBBase | |
| DeleteResidue() | OBAtom | inline |
| DoTransformations(const std::map< std::string, std::string > *, OBConversion *) | OBBase | inlinevirtual |
| Duplicate(OBAtom *) | OBAtom | |
| EndBonds() | OBAtom | inline |
| EndData() | OBBase | inline |
| ExplicitHydrogenCount(bool ExcludeIsotopes=false) const | OBAtom | |
| GetAllData(const unsigned int type) | OBBase | |
| GetAngle(int b, int c) | OBAtom | |
| GetAngle(OBAtom *b, OBAtom *c) | OBAtom | |
| GetAtomicMass() const | OBAtom | |
| GetAtomicNum() const | OBAtom | inline |
| GetBond(OBAtom *) | OBAtom | |
| GetCoordinate() | OBAtom | inline |
| GetCoordinateIdx() const | OBAtom | inline |
| GetData(const unsigned int type) | OBBase | |
| GetData(const std::string &) | OBBase | |
| GetData(const char *) | OBBase | |
| GetData() | OBBase | inline |
| GetData(DataOrigin source) | OBBase | |
| GetDistance(int index) | OBAtom | |
| GetDistance(OBAtom *) | OBAtom | |
| GetDistance(vector3 *v) | OBAtom | |
| GetExactMass() const | OBAtom | |
| GetExplicitDegree() const | OBAtom | inline |
| GetExplicitValence() const | OBAtom | |
| GetFlag() const | OBAtom | inlineprotected |
| GetFormalCharge() const | OBAtom | inline |
| GetHeteroDegree() const | OBAtom | |
| GetHvyDegree() const | OBAtom | |
| GetHyb() const | OBAtom | |
| GetId() const | OBAtom | inline |
| GetIdx() const | OBAtom | inline |
| GetImplicitHCount() const | OBAtom | inline |
| GetIndex() const | OBAtom | inline |
| GetIsotope() const | OBAtom | inline |
| GetNewBondVector(vector3 &v, double length) | OBAtom | |
| GetParent() | OBAtom | inline |
| GetPartialCharge() | OBAtom | |
| GetResidue() | OBAtom | |
| GetSpinMultiplicity() const | OBAtom | inline |
| GetTitle(bool replaceNewlines=true) const | OBBase | inlinevirtual |
| GetTotalDegree() const | OBAtom | inline |
| GetTotalValence() const | OBAtom | |
| GetType() | OBAtom | |
| GetVector() | OBAtom | |
| GetVector() const | OBAtom | |
| GetX() const | OBAtom | inline |
| GetY() const | OBAtom | inline |
| GetZ() const | OBAtom | inline |
| HasAlphaBetaUnsat(bool includePandS=true) | OBAtom | |
| HasAromaticBond() | OBAtom | inline |
| HasBondOfOrder(unsigned int bo) | OBAtom | |
| HasData(const std::string &) | OBBase | |
| HasData(const char *) | OBBase | |
| HasData(const unsigned int type) | OBBase | |
| HasDoubleBond() | OBAtom | inline |
| HasFlag(int flag) | OBAtom | inlineprotected |
| HasNonSingleBond() | OBAtom | |
| HasResidue() | OBAtom | inline |
| HasSingleBond() | OBAtom | inline |
| HighestBondOrder() | OBAtom | |
| HtoMethyl() | OBAtom | |
| InsertBond(OBBondIterator &i, OBBond *bond) | OBAtom | inline |
| IsAmideNitrogen() | OBAtom | |
| IsAromatic() const | OBAtom | |
| IsAromaticNOxide() | OBAtom | |
| IsAxial() | OBAtom | |
| IsCarboxylOxygen() | OBAtom | |
| IsChiral() | OBAtom | |
| IsConnected(OBAtom *) | OBAtom | |
| IsHbondAcceptor() | OBAtom | |
| IsHbondAcceptorSimple() | OBAtom | |
| IsHbondDonor() | OBAtom | |
| IsHbondDonorH() | OBAtom | |
| IsHetAtom() | OBAtom | inline |
| IsHeteroatom() | OBAtom | |
| IsInRing() const | OBAtom | |
| IsInRingSize(int) const | OBAtom | |
| IsMetal() | OBAtom | |
| IsNitroOxygen() | OBAtom | |
| IsNonPolarHydrogen() | OBAtom | |
| IsOneFour(OBAtom *) | OBAtom | |
| IsOneThree(OBAtom *) | OBAtom | |
| IsPhosphateOxygen() | OBAtom | |
| IsPolarHydrogen() | OBAtom | |
| IsSulfateOxygen() | OBAtom | |
| LewisAcidBaseCounts() const | OBAtom | |
| MatchesSMARTS(const char *) | OBAtom | |
| MemberOfRingCount() const | OBAtom | |
| MemberOfRingSize() const | OBAtom | |
| NewResidue() | OBAtom | inline |
| NextBond(OBBondIterator &i) | OBAtom | |
| NextNbrAtom(OBBondIterator &i) | OBAtom | |
| OBAtom() | OBAtom | |
| operator=(OBAtom &) | OBAtom | |
| operator==(const OBAtom *other) const | OBAtom | inline |
| SetAromatic(bool value=true) | OBAtom | inline |
| SetAtomicNum(int atomicnum) | OBAtom | inline |
| SetCoordPtr(double **c) | OBAtom | inline |
| SetData(OBGenericData *d) | OBBase | inline |
| SetFlag(int flag) | OBAtom | inlineprotected |
| SetFormalCharge(int fcharge) | OBAtom | inline |
| SetHyb(int hyb) | OBAtom | inline |
| SetHybAndGeom(int) | OBAtom | |
| SetId(unsigned long id) | OBAtom | inline |
| SetIdx(int idx) | OBAtom | inline |
| SetImplicitHCount(unsigned int val) | OBAtom | inline |
| SetInRing(bool value=true) | OBAtom | inline |
| SetIsotope(unsigned int iso) | OBAtom | |
| SetParent(OBMol *ptr) | OBAtom | inline |
| SetPartialCharge(double pcharge) | OBAtom | inline |
| SetResidue(OBResidue *res) | OBAtom | inline |
| SetSpinMultiplicity(short spin) | OBAtom | inline |
| SetTitle(const char *) | OBBase | inlinevirtual |
| SetType(const char *type) | OBAtom | |
| SetType(const std::string &type) | OBAtom | |
| SetVector(const vector3 &v) | OBAtom | |
| SetVector(const double x, const double y, const double z) | OBAtom | |
| SetVector() | OBAtom | |
| SmallestBondAngle() | OBAtom | |
| StereoFlag enum name | OBAtom | |
| UnsetFlag(int flag) | OBAtom | inlineprotected |
| Visit | OBAtom | |
| x() const | OBAtom | inline |
| y() const | OBAtom | inline |
| z() const | OBAtom | inline |
| ~OBAtom() | OBAtom | virtual |
| ~OBBase() | OBBase | inlinevirtual |
