Q (Partial Charge) & Type
| b | Disable automatic bonding |
| d | Input file is in dlg (docking log file) format. |
| b | Enables automatic bonding before writing to pdbqt format |
| r | Outputs rigid molecule (no branches) |
| s | Outputs as a flexible residue |
| p | Preserves the atom indexes from the input file The default is to renumber sequentially. |
