Difference between revisions of "Related Projects"
From Open Babel
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* [http://www.bioclipse.net/ Bioclipse] - Java based bioinformatics and cheminformatics tools | * [http://www.bioclipse.net/ Bioclipse] - Java based bioinformatics and cheminformatics tools | ||
* [http://www.blueobelisk.org/ Blue Obelisk Movement] - A group of open source chemistry and chemoinformatics projects | * [http://www.blueobelisk.org/ Blue Obelisk Movement] - A group of open source chemistry and chemoinformatics projects | ||
| − | * [http://qsar.sourceforge.net/dicts/blue-obelisk/index.xhtml Blue Obelisk - Chemoinformatics Algorithm Dictionary] | + | ** [http://qsar.sourceforge.net/dicts/blue-obelisk/index.xhtml Blue Obelisk - Chemoinformatics Algorithm Dictionary] |
| − | * [http://www.blueobelisk.org/dokuwiki/doku.php?id=wiki:datarepository Blue Obelisk - Chemoinformatics Data Repository] | + | ** [http://www.blueobelisk.org/dokuwiki/doku.php?id=wiki:datarepository Blue Obelisk - Chemoinformatics Data Repository] |
| + | ** [http://www.blueobelisk.org/planetbo/ Planet BO - Personal blogs of Blue Obelisk contributors] | ||
| + | ** [http://wiki.cubic.uni-koeln.de/cb/ Chemical Blogosphere] | ||
* [http://cdk.sourceforge.net/ Chemical Development Kit (CDK)] - Java library for structural chemo- and bioinformatics. | * [http://cdk.sourceforge.net/ Chemical Development Kit (CDK)] - Java library for structural chemo- and bioinformatics. | ||
| + | * [http://chem-file.sourceforge.net/ ChemFile - Open Chemical Structures Library] | ||
* [http://cml.sourceforge.net/ Chemistry Markup Language (CML)] - A standardized XML file format for chemistry and molecular science | * [http://cml.sourceforge.net/ Chemistry Markup Language (CML)] - A standardized XML file format for chemistry and molecular science | ||
* [http://depth-first.com/ Depth First] - Cheminformatics blog using open source chemistry tools. | * [http://depth-first.com/ Depth First] - Cheminformatics blog using open source chemistry tools. | ||
Revision as of 10:28, 1 February 2007
There are many projects which use Open Babel code internally as well as related open source chemistry projects.
Programs Using Open Babel
- Brabosphere - Brabosphere, a molecular visualization tool for the quantum mechanics package BRABO.
- Chemtool - 2D molecular drawing tool using GTK toolkit
- ChemSpotlight - Chemical indexing for Mac OS X
- eMolecules - World-wide chemical search
- Gabedit - Molecular editor for GNOME environment
- GChemPaint - 2D molecular drawing tool for GNOME environment
- Ghemical - Molecular editor for GNOME environment
- Gnome Chemistry Utils - GTK/Gnome based tools for chemistry software development
- iBabel - Mac OS X interface to Open Babel (see also iBabel documentation)
- Kalzium - KDE Chemistry Education project
- Kemistry - Collection of chemical applications for the KDE environment
- KMovisto - 3D molecular viewer for Linux
- lazar - Lazy Structure-Activity Relationships (prediction of toxicity data)
- OOPSE - Object-Oriented Parallel Simulation Engine
- NanoHive Nanospace Simulator -Modular simulator for modeling nanometer scale physics and chemistry
- pgchem::tigress - PostgreSQL database engine for molecules
- SMIREP - SMILES based structure-activity relationship rules
- SPORCalc - Fingerprint−based Probabilistic Scoring of Metabolic Sites
- ViewMol - Molecular viewer and graphical front end for computational chemistry programs
- Virtual Computational Chemistry Laboratory - Web based services for computational chemistry
- World Wide Molecular Matrix - Web based services for chemoinformatics
- XDrawChem - XWindows/Qt-based 2D molecular drawing tool
- YASARA - Yet Another Scientific Artificial Reality Application
Related Open Chemistry Projects
- Bioclipse - Java based bioinformatics and cheminformatics tools
- Blue Obelisk Movement - A group of open source chemistry and chemoinformatics projects
- Chemical Development Kit (CDK) - Java library for structural chemo- and bioinformatics.
- ChemFile - Open Chemical Structures Library
- Chemistry Markup Language (CML) - A standardized XML file format for chemistry and molecular science
- Depth First - Cheminformatics blog using open source chemistry tools.
- JChemPaint - A 2D molecular drawing package based on CDK.
- Jmol - Java molecular viewer for desktop or web visualization
- JOELib - Java version of OpenBabel, and like OpenBabel also a OELib successor
- NMRShiftDB - Open database of molecular NMR data
- PerlMol - Perl Modules for Molecular Chemistry
- Open Source QSAR
