| _c | OBAtom | [protected] |
| _cidx | OBAtom | [protected] |
| _ele | OBAtom | [protected] |
| _fcharge | OBAtom | [protected] |
| _flags | OBAtom | [protected] |
| _hyb | OBAtom | [protected] |
| _idx | OBNodeBase | [protected] |
| _impval | OBAtom | [protected] |
| _isotope | OBAtom | [protected] |
| _parent | OBNodeBase | [protected] |
| _pcharge | OBAtom | [protected] |
| _residue | OBAtom | [protected] |
| _spinmultiplicity | OBAtom | [protected] |
| _type | OBAtom | [protected] |
| _v | OBAtom | [protected] |
| _vbond | OBNodeBase | [protected] |
| _vdata | OBAtom | [protected] |
| AddBond(OBBond *bond) | OBAtom | [inline] |
| AddEdge(OBEdgeBase *b) | OBNodeBase | [inline] |
| AverageBondAngle() | OBAtom | |
| Begin(std::vector< OBEdgeBase * >::iterator &) | OBNodeBase | |
| BeginBond(std::vector< OBEdgeBase * >::iterator &i) | OBAtom | |
| BeginBonds() | OBAtom | [inline] |
| BeginData() | OBAtom | [inline] |
| BeginNbr(std::vector< OBEdgeBase * >::iterator &) | OBNodeBase | |
| BeginNbrAtom(std::vector< OBEdgeBase * >::iterator &) | OBAtom | |
| BOSum() const | OBAtom | |
| ClassDescription() | OBBase | [inline, static] |
| Clear() | OBAtom | |
| ClearBond() | OBAtom | [inline] |
| ClearCoordPtr() | OBAtom | [inline] |
| CountBondsOfOrder(unsigned int) | OBAtom | |
| CountFreeOxygens() const | OBAtom | |
| DataSize() | OBAtom | [inline] |
| DecrementImplicitValence() | OBAtom | [inline] |
| DeleteBond(OBBond *) | OBAtom | |
| DeleteData(unsigned int type) | OBAtom | |
| DeleteData(OBGenericData *) | OBAtom | |
| DeleteData(std::vector< OBGenericData * > &) | OBAtom | |
| DeleteResidue() | OBAtom | [inline] |
| DoTransformations(const std::map< std::string, std::string > *pOptions) | OBBase | [inline, virtual] |
| EndBonds() | OBAtom | [inline] |
| EndData() | OBAtom | [inline] |
| Error(int f) | OBNodeBase | [inline] |
| Eval(OBNodeBase *) const | OBNodeBase | [inline, virtual] |
| ExplicitHydrogenCount() const | OBAtom | [virtual] |
| GetAngle(int b, int c) | OBAtom | |
| GetAngle(OBAtom *b, OBAtom *c) | OBAtom | |
| GetAtomicMass() const | OBAtom | |
| GetAtomicNum() const | OBAtom | [inline, virtual] |
| GetBond(OBAtom *) | OBAtom | |
| GetCIdx() const | OBAtom | [inline] |
| GetCoordinate() | OBAtom | [inline] |
| GetCoordinateIdx() const | OBAtom | [inline] |
| GetData(unsigned int type) | OBAtom | |
| GetData(std::string &) | OBAtom | |
| GetData(const char *) | OBAtom | |
| GetData() | OBAtom | [inline] |
| GetDistance(int index) | OBAtom | |
| GetDistance(OBAtom *) | OBAtom | |
| GetExactMass() const | OBAtom | |
| GetFlag() const | OBAtom | [inline, protected] |
| GetFormalCharge() const | OBAtom | [inline, virtual] |
| GetHeteroValence() const | OBAtom | |
| GetHvyValence() const | OBAtom | [virtual] |
| GetHyb() const | OBAtom | [virtual] |
| GetIdx() const | OBAtom | [inline, virtual] |
| GetImplicitValence() const | OBAtom | [virtual] |
| GetIsotope() const | OBAtom | [inline] |
| GetMatch() | OBNodeBase | [inline, virtual] |
| GetNewBondVector(vector3 &v, double length) | OBAtom | |
| GetNextAtom() | OBAtom | |
| GetParent() | OBNodeBase | [inline, virtual] |
| GetPartialCharge() | OBAtom | |
| GetResidue() | OBAtom | |
| GetSpinMultiplicity() const | OBAtom | [inline] |
| GetType() | OBAtom | |
| GetValence() const | OBAtom | [inline, virtual] |
| GetVector() | OBAtom | |
| GetX() | OBAtom | [inline] |
| GetY() | OBAtom | [inline] |
| GetZ() | OBAtom | [inline] |
| HasAlphaBetaUnsat(bool includePandS=true) | OBAtom | |
| HasAromaticBond() | OBAtom | [inline] |
| HasBondOfOrder(unsigned int) | OBAtom | |
| HasChiralitySpecified() | OBAtom | [inline] |
| HasChiralVolume() | OBAtom | [inline] |
| HasData(std::string &) | OBAtom | |
| HasData(const char *) | OBAtom | |
| HasData(unsigned int type) | OBAtom | |
| HasDoubleBond() | OBAtom | [inline] |
| HasFlag(int flag) | OBAtom | [inline, protected] |
| HasNonSingleBond() | OBAtom | |
| HasResidue() | OBAtom | [inline] |
| HasSingleBond() | OBAtom | [inline] |
| HtoMethyl() | OBAtom | |
| ImplicitHydrogenCount() const | OBAtom | [virtual] |
| IncrementImplicitValence() | OBAtom | [inline] |
| InsertBond(std::vector< OBEdgeBase * >::iterator &i, OBBond *bond) | OBAtom | [inline] |
| IsAmideNitrogen() | OBAtom | |
| IsAntiClockwise() | OBAtom | [inline] |
| IsAromatic() const | OBAtom | [virtual] |
| IsAromaticNOxide() | OBAtom | |
| IsAxial() | OBAtom | |
| IsCarbon() | OBAtom | [inline] |
| IsCarboxylOxygen() | OBAtom | |
| IsChiral() | OBAtom | |
| IsClockwise() | OBAtom | [inline] |
| IsConnected(OBAtom *) | OBAtom | |
| OpenBabel::OBNodeBase::IsConnected(OBNodeBase *) | OBNodeBase | [virtual] |
| IsHbondAcceptor() | OBAtom | |
| IsHbondDonor() | OBAtom | |
| IsHbondDonorH() | OBAtom | |
| IsHeteroatom() | OBAtom | |
| IsHydrogen() | OBAtom | [inline] |
| IsInRing() const | OBAtom | [virtual] |
| IsInRingSize(int) const | OBAtom | [virtual] |
| IsNegativeStereo() | OBAtom | [inline] |
| IsNitrogen() | OBAtom | [inline] |
| IsNitroOxygen() | OBAtom | |
| IsNonPolarHydrogen() | OBAtom | |
| IsNotCorH() | OBAtom | |
| IsOneFour(OBAtom *) | OBAtom | |
| IsOneThree(OBAtom *) | OBAtom | |
| IsOxygen() | OBAtom | [inline] |
| IsPhosphateOxygen() | OBAtom | |
| IsPhosphorus() | OBAtom | [inline] |
| IsPolarHydrogen() | OBAtom | |
| IsPositiveStereo() | OBAtom | [inline] |
| IsSulfateOxygen() | OBAtom | |
| IsSulfur() | OBAtom | [inline] |
| KBOSum() const | OBAtom | [virtual] |
| MatchesSMARTS(const char *) | OBAtom | |
| MemberOfRingCount() const | OBAtom | [virtual] |
| MemberOfRingSize() const | OBAtom | |
| NewResidue() | OBAtom | [inline] |
| Next(std::vector< OBEdgeBase * >::iterator &) | OBNodeBase | |
| NextBond(std::vector< OBEdgeBase * >::iterator &i) | OBAtom | |
| NextNbr(std::vector< OBEdgeBase * >::iterator &) | OBNodeBase | |
| NextNbrAtom(std::vector< OBEdgeBase * >::iterator &) | OBAtom | |
| OBAtom() | OBAtom | |
| OBNodeBase() | OBNodeBase | [inline] |
| operator=(OBAtom &) | OBAtom | |
| SetAntiClockwiseStereo() | OBAtom | [inline] |
| SetAromatic() | OBAtom | [inline, virtual] |
| SetAtomicNum(int atomicnum) | OBAtom | [inline] |
| SetChiral() | OBAtom | [inline] |
| SetClockwiseStereo() | OBAtom | [inline] |
| SetCoordPtr(double **c) | OBAtom | [inline] |
| SetData(OBGenericData *d) | OBAtom | [inline] |
| SetFlag(int flag) | OBAtom | [inline, protected] |
| SetFormalCharge(int fcharge) | OBAtom | [inline] |
| SetHyb(int hyb) | OBAtom | [inline] |
| SetHybAndGeom(int) | OBAtom | |
| SetIdx(int idx) | OBAtom | [inline] |
| SetImplicitValence(int val) | OBAtom | [inline] |
| SetInRing() | OBAtom | [inline] |
| SetIsotope(unsigned int iso) | OBAtom | |
| SetMatch(OBNodeBase *) | OBNodeBase | [inline, virtual] |
| SetNegativeStereo() | OBAtom | [inline] |
| SetParent(OBGraphBase *) | OBNodeBase | |
| SetPartialCharge(double pcharge) | OBAtom | [inline] |
| SetPositiveStereo() | OBAtom | [inline] |
| SetResidue(OBResidue *res) | OBAtom | [inline] |
| SetSpinMultiplicity(short spin) | OBAtom | [inline] |
| SetType(char *type) | OBAtom | |
| SetType(std::string &type) | OBAtom | |
| SetVector(vector3 &v) | OBAtom | |
| SetVector(const double x, const double y, const double z) | OBAtom | |
| SetVector() | OBAtom | |
| SmallestBondAngle() | OBAtom | |
| UnsetAromatic() | OBAtom | [inline] |
| UnsetStereo() | OBAtom | [inline] |
| Visit | OBNodeBase | |
| x() | OBAtom | [inline] |
| y() | OBAtom | [inline] |
| z() | OBAtom | [inline] |
| ~OBAtom() | OBAtom | [virtual] |
| ~OBBase() | OBBase | [inline, virtual] |
| ~OBNodeBase() | OBNodeBase | [inline, virtual] |
1.5.1.