From Open Babel
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This page provides links to all the information you need to use OpenBabel from the Python programming language.

N. M. O'Boyle, C. Morley and G. R. Hutchison. Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit Chem. Cent. J. 2008, 2, 5.
  • See further examples of the use of the Python bindings

If you find Pybel useful, you may also be interested in Cinfony which allows you to access several cheminformatics toolkits using the same Python API as Pybel, from both regular Python and Jython.