OBMessageHandler Class Reference

#include <openbabel/oberror.h>

List of all members.

Public Member Functions
	OBMessageHandler ()
	~OBMessageHandler ()
void	ThrowError (OBError err, errorQualifier qqualifier=always)
void	ThrowError (const std::string &method, const std::string &errorMsg, obMessageLevel level=obDebug, errorQualifier qualifier=always)
std::vector< std::string >	GetMessagesOfLevel (const obMessageLevel)
void	StartLogging ()
void	StopLogging ()
void	SetMaxLogEntries (unsigned int max)
unsigned int	GetMaxLogEntries ()
void	ClearLog ()
void	SetOutputLevel (const obMessageLevel level)
obMessageLevel	GetOutputLevel ()
void	SetOutputStream (std::ostream *os)
std::ostream *	GetOutputStream ()
bool	StartErrorWrap ()
bool	StopErrorWrap ()
unsigned int	GetErrorMessageCount ()
unsigned int	GetWarningMessageCount ()
unsigned int	GetInfoMessageCount ()
unsigned int	GetAuditMessageCount ()
unsigned int	GetDebugMessageCount ()
std::string	GetMessageSummary ()
Protected Attributes
unsigned int	_messageCount [5]
std::deque< OBError >	_messageList
obMessageLevel	_outputLevel
std::ostream *	_outputStream
bool	_logging
unsigned int	_maxEntries
std::streambuf *	_inWrapStreamBuf
std::streambuf *	_filterStreamBuf

Detailed Description

OBMessageHandler represents a configurable error system for Open Babel.

A global error log is defined by the Open Babel library for use of internal code as well as code built on top of Open Babel. This class allows flexible filtering based on urgency (defined by the obMessageLevel type), an "audit log" of molecular changes, including recall using the GetMessagesOfLevel method, etc.

The default is to only log and output errors of priority obMessageLevel::obError or obMessageLevel::obWarning.

Long-running code may wish to set the size of the in-memory error log using the StartLogging / StopLogging methods and SetMaxLogEntries. Otherwise, the error log may easily fill up, requiring large amounts of memory.

If you wish to divert error output to a different std::ostream (i.e., for graphical display, or a file log), use the SetOutputStream method -- the default goes to the std::clog stream. Furthermore, some older code uses std::cerr for direct error output, rather than the ThrowError() methods in this class. To prevent this, you can turn on "error wrapping" using the StartErrorWrap method -- this behavior is turned off by default.

To make it easy to use the OBMessageHandler class and error logging facilities, a global log is defined:

  OBERROR extern OBMessageHandler obErrorLog;

Therefore, it is very easy to log errors:

  if (atomIndex < 1 || atomIndex > mol.NumAtoms() )
     obErrorLog.ThrowError(__FUNCTION__, "Requested Atom Out of Range", obDebug);

or

  stringstream errorMsg;
  errorMsg << " Could not parse line in type translation table types.txt -- incorect number of columns";
  errorMsg << " found " << vc.size() << " expected " << _ncols << ".";
  obErrorLog.ThrowError(__FUNCTION__, errorMsg.str(), obInfo);

The __FUNCTION__ builtin is defined by many compilers (e.g., GCC) but can be defined to an empty string on some platforms without this compiler extension.

Output from the error log typically looks like:

  ==============================
 Open Babel Audit Log  in ReadChemObject
  OpenBabel::Read molecule Protein Data Bank format
  ==============================
 Open Babel Information  in ParseConectRecord
  WARNING: Problems reading a PDB file
  Problems reading a CONECT record.
  According to the PDB specification,
  the record should have 70 columns, but OpenBabel found 61 columns.

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

• oberror.h
• oberror.cpp