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  • Introduction
  • Install Open Babel
  • obabel - Convert, Filter and Manipulate Chemical Data
  • The Open Babel GUI
  • Tutorial on using the GUI
  • Molecular fingerprints and similarity searching
  • obabel vs Chemistry Toolkit Rosetta
  • 2D Depiction
  • 3D Structure Generation
  • Molecular Mechanics and Force Fields
  • Write software using the Open Babel library
    • The Open Babel API
    • C++
    • Python
      • Introduction
      • Install Python bindings
      • The openbabel module
      • Pybel
      • Pybel API
      • Examples
    • Java
    • Perl
    • CSharp and OBDotNet
    • Ruby
    • Updating to Open Babel 3.0 from 2.x
  • Cheminformatics 101
  • Stereochemistry
  • Handling of aromaticity
  • Radicals and SMILES extensions
  • Contributing to Open Babel
  • Adding plugins
  • Supported File Formats and Options
  • Descriptors
  • Charge models
  • Release Notes
  • User Guide
  • Write software using the Open Babel library
  • Python

Python#

  • Introduction
  • Install Python bindings
    • Windows
    • Linux and MacOSX
  • The openbabel module
    • Examples
    • Using iterators
    • Calling a method requiring an array of C doubles
    • Accessing OBPairData, OBUnitCell and other OBGenericData
    • Using FastSearch from Python
    • Combining numpy with Open Babel
  • Pybel
    • Atoms and Molecules
    • Input/Output
    • Fingerprints
    • SMARTS matching
    • Combining Pybel with openbabel.py
  • Pybel API
  • Examples
    • Output Molecular Weight for a Multi-Molecule SDF File
    • Find information on all of the atoms and bonds connected to a particular atom
    • Examples from around the web
    • Split an SDF file using the molecule titles
    • An implementation of RECAP

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